Doing Bayesian Data Analysis

A Tutorial Introduction with R
Author: John Kruschke
Publisher: Academic Press
ISBN: 9780123814869
Category: Mathematics
Page: 672
View: 4348
DOWNLOAD NOW »
There is an explosion of interest in Bayesian statistics, primarily because recently created computational methods have finally made Bayesian analysis tractable and accessible to a wide audience. Doing Bayesian Data Analysis, A Tutorial Introduction with R and BUGS, is for first year graduate students or advanced undergraduates and provides an accessible approach, as all mathematics is explained intuitively and with concrete examples. It assumes only algebra and ‘rusty’ calculus. Unlike other textbooks, this book begins with the basics, including essential concepts of probability and random sampling. The book gradually climbs all the way to advanced hierarchical modeling methods for realistic data. The text provides complete examples with the R programming language and BUGS software (both freeware), and begins with basic programming examples, working up gradually to complete programs for complex analyses and presentation graphics. These templates can be easily adapted for a large variety of students and their own research needs.The textbook bridges the students from their undergraduate training into modern Bayesian methods. Accessible, including the basics of essential concepts of probability and random sampling Examples with R programming language and BUGS software Comprehensive coverage of all scenarios addressed by non-bayesian textbooks- t-tests, analysis of variance (ANOVA) and comparisons in ANOVA, multiple regression, and chi-square (contingency table analysis). Coverage of experiment planning R and BUGS computer programming code on website Exercises have explicit purposes and guidelines for accomplishment

Doing Bayesian Data Analysis

A Tutorial with R, JAGS, and Stan
Author: John K. Kruschke
Publisher: Academic Press
ISBN: 9780124058880
Category: Mathematics
Page: 759
View: 5268
DOWNLOAD NOW »
Provides an accessible approach to Bayesian data analysis, as material is explained clearly with concrete examples. The book begins with the basics, including essential concepts of probability and random sampling, and gradually progresses to advanced hierarchical modeling methods for realistic data.

Bayes' Rule

A Tutorial Introduction to Bayesian Analysis
Author: James V. Stone
Publisher: Sebtel Press
ISBN: 0956372848
Category: Bayesian statistical decision theory
Page: 170
View: 7219
DOWNLOAD NOW »
In this richly illustrated book, a range of accessible examples are used to show how Bayes' rule is actually a natural consequence of commonsense reasoning. The tutorial style of writing, combined with a comprehensive glossary, makes this an ideal primer for the novice who wishes to become familiar with the basic principles of Bayesian analysis.

Bayesian Data Analysis, Third Edition


Author: Andrew Gelman,John B. Carlin,Hal S. Stern,David B. Dunson,Aki Vehtari,Donald B. Rubin
Publisher: CRC Press
ISBN: 1439840954
Category: Mathematics
Page: 675
View: 2451
DOWNLOAD NOW »
Now in its third edition, this classic book is widely considered the leading text on Bayesian methods, lauded for its accessible, practical approach to analyzing data and solving research problems. Bayesian Data Analysis, Third Edition continues to take an applied approach to analysis using up-to-date Bayesian methods. The authors—all leaders in the statistics community—introduce basic concepts from a data-analytic perspective before presenting advanced methods. Throughout the text, numerous worked examples drawn from real applications and research emphasize the use of Bayesian inference in practice. New to the Third Edition Four new chapters on nonparametric modeling Coverage of weakly informative priors and boundary-avoiding priors Updated discussion of cross-validation and predictive information criteria Improved convergence monitoring and effective sample size calculations for iterative simulation Presentations of Hamiltonian Monte Carlo, variational Bayes, and expectation propagation New and revised software code The book can be used in three different ways. For undergraduate students, it introduces Bayesian inference starting from first principles. For graduate students, the text presents effective current approaches to Bayesian modeling and computation in statistics and related fields. For researchers, it provides an assortment of Bayesian methods in applied statistics. Additional materials, including data sets used in the examples, solutions to selected exercises, and software instructions, are available on the book’s web page.

A First Course in Bayesian Statistical Methods


Author: Peter D. Hoff
Publisher: Springer Science & Business Media
ISBN: 9780387924076
Category: Mathematics
Page: 272
View: 3768
DOWNLOAD NOW »
A self-contained introduction to probability, exchangeability and Bayes’ rule provides a theoretical understanding of the applied material. Numerous examples with R-code that can be run "as-is" allow the reader to perform the data analyses themselves. The development of Monte Carlo and Markov chain Monte Carlo methods in the context of data analysis examples provides motivation for these computational methods.

Applied Bayesian Statistics

With R and OpenBUGS Examples
Author: Mary Kathryn Cowles
Publisher: Springer Science & Business Media
ISBN: 1461456967
Category: Mathematics
Page: 232
View: 4655
DOWNLOAD NOW »
This book is based on over a dozen years teaching a Bayesian Statistics course. The material presented here has been used by students of different levels and disciplines, including advanced undergraduates studying Mathematics and Statistics and students in graduate programs in Statistics, Biostatistics, Engineering, Economics, Marketing, Pharmacy, and Psychology. The goal of the book is to impart the basics of designing and carrying out Bayesian analyses, and interpreting and communicating the results. In addition, readers will learn to use the predominant software for Bayesian model-fitting, R and OpenBUGS. The practical approach this book takes will help students of all levels to build understanding of the concepts and procedures required to answer real questions by performing Bayesian analysis of real data. Topics covered include comparing and contrasting Bayesian and classical methods, specifying hierarchical models, and assessing Markov chain Monte Carlo output. Kate Cowles taught Suzuki piano for many years before going to graduate school in Biostatistics. Her research areas are Bayesian and computational statistics, with application to environmental science. She is on the faculty of Statistics at The University of Iowa.

Bayesian Methods

A Social and Behavioral Sciences Approach, Third Edition
Author: Jeff Gill
Publisher: CRC Press
ISBN: 1439862494
Category: Mathematics
Page: 724
View: 4854
DOWNLOAD NOW »
An Update of the Most Popular Graduate-Level Introductions to Bayesian Statistics for Social Scientists Now that Bayesian modeling has become standard, MCMC is well understood and trusted, and computing power continues to increase, Bayesian Methods: A Social and Behavioral Sciences Approach, Third Edition focuses more on implementation details of the procedures and less on justifying procedures. The expanded examples reflect this updated approach. New to the Third Edition A chapter on Bayesian decision theory, covering Bayesian and frequentist decision theory as well as the connection of empirical Bayes with James–Stein estimation A chapter on the practical implementation of MCMC methods using the BUGS software Greatly expanded chapter on hierarchical models that shows how this area is well suited to the Bayesian paradigm Many new applications from a variety of social science disciplines Double the number of exercises, with 20 now in each chapter Updated BaM package in R, including new datasets, code, and procedures for calling BUGS packages from R This bestselling, highly praised text continues to be suitable for a range of courses, including an introductory course or a computing-centered course. It shows students in the social and behavioral sciences how to use Bayesian methods in practice, preparing them for sophisticated, real-world work in the field.

Bayesian Essentials with R


Author: Jean-Michel Marin,Christian P. Robert
Publisher: Springer Science & Business Media
ISBN: 1461486874
Category: Computers
Page: 296
View: 7148
DOWNLOAD NOW »
This Bayesian modeling book provides a self-contained entry to computational Bayesian statistics. Focusing on the most standard statistical models and backed up by real datasets and an all-inclusive R (CRAN) package called bayess, the book provides an operational methodology for conducting Bayesian inference, rather than focusing on its theoretical and philosophical justifications. Readers are empowered to participate in the real-life data analysis situations depicted here from the beginning. Special attention is paid to the derivation of prior distributions in each case and specific reference solutions are given for each of the models. Similarly, computational details are worked out to lead the reader towards an effective programming of the methods given in the book. In particular, all R codes are discussed with enough detail to make them readily understandable and expandable. Bayesian Essentials with R can be used as a textbook at both undergraduate and graduate levels. It is particularly useful with students in professional degree programs and scientists to analyze data the Bayesian way. The text will also enhance introductory courses on Bayesian statistics. Prerequisites for the book are an undergraduate background in probability and statistics, if not in Bayesian statistics.

Introduction to Bayesian Statistics


Author: Karl-Rudolf Koch
Publisher: Springer Science & Business Media
ISBN: 3540727264
Category: Science
Page: 249
View: 6954
DOWNLOAD NOW »
This book presents Bayes’ theorem, the estimation of unknown parameters, the determination of confidence regions and the derivation of tests of hypotheses for the unknown parameters. It does so in a simple manner that is easy to comprehend. The book compares traditional and Bayesian methods with the rules of probability presented in a logical way allowing an intuitive understanding of random variables and their probability distributions to be formed.

Statistical Rethinking

A Bayesian Course with Examples in R and Stan
Author: Richard McElreath
Publisher: CRC Press
ISBN: 1315362619
Category: Mathematics
Page: 487
View: 2563
DOWNLOAD NOW »
Statistical Rethinking: A Bayesian Course with Examples in R and Stan builds readers’ knowledge of and confidence in statistical modeling. Reflecting the need for even minor programming in today’s model-based statistics, the book pushes readers to perform step-by-step calculations that are usually automated. This unique computational approach ensures that readers understand enough of the details to make reasonable choices and interpretations in their own modeling work. The text presents generalized linear multilevel models from a Bayesian perspective, relying on a simple logical interpretation of Bayesian probability and maximum entropy. It covers from the basics of regression to multilevel models. The author also discusses measurement error, missing data, and Gaussian process models for spatial and network autocorrelation. By using complete R code examples throughout, this book provides a practical foundation for performing statistical inference. Designed for both PhD students and seasoned professionals in the natural and social sciences, it prepares them for more advanced or specialized statistical modeling. Web Resource The book is accompanied by an R package (rethinking) that is available on the author’s website and GitHub. The two core functions (map and map2stan) of this package allow a variety of statistical models to be constructed from standard model formulas.

Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and Stan


Author: Franzi Korner-Nievergelt,Tobias Roth,Stefanie von Felten,Jérôme Guélat,Bettina Almasi,Pius Korner-Nievergelt
Publisher: Academic Press
ISBN: 0128016787
Category: Science
Page: 328
View: 569
DOWNLOAD NOW »
Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and STAN examines the Bayesian and frequentist methods of conducting data analyses. The book provides the theoretical background in an easy-to-understand approach, encouraging readers to examine the processes that generated their data. Including discussions of model selection, model checking, and multi-model inference, the book also uses effect plots that allow a natural interpretation of data. Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and STAN introduces Bayesian software, using R for the simple modes, and flexible Bayesian software (BUGS and Stan) for the more complicated ones. Guiding the ready from easy toward more complex (real) data analyses ina step-by-step manner, the book presents problems and solutions—including all R codes—that are most often applicable to other data and questions, making it an invaluable resource for analyzing a variety of data types. Introduces Bayesian data analysis, allowing users to obtain uncertainty measurements easily for any derived parameter of interest Written in a step-by-step approach that allows for eased understanding by non-statisticians Includes a companion website containing R-code to help users conduct Bayesian data analyses on their own data All example data as well as additional functions are provided in the R-package blmeco

Bayesian Computation with R


Author: Jim Albert
Publisher: Springer Science & Business Media
ISBN: 0387922989
Category: Mathematics
Page: 300
View: 505
DOWNLOAD NOW »
There has been dramatic growth in the development and application of Bayesian inference in statistics. Berger (2000) documents the increase in Bayesian activity by the number of published research articles, the number of books,andtheextensivenumberofapplicationsofBayesianarticlesinapplied disciplines such as science and engineering. One reason for the dramatic growth in Bayesian modeling is the availab- ity of computational algorithms to compute the range of integrals that are necessary in a Bayesian posterior analysis. Due to the speed of modern c- puters, it is now possible to use the Bayesian paradigm to ?t very complex models that cannot be ?t by alternative frequentist methods. To ?t Bayesian models, one needs a statistical computing environment. This environment should be such that one can: write short scripts to de?ne a Bayesian model use or write functions to summarize a posterior distribution use functions to simulate from the posterior distribution construct graphs to illustrate the posterior inference An environment that meets these requirements is the R system. R provides a wide range of functions for data manipulation, calculation, and graphical d- plays. Moreover, it includes a well-developed, simple programming language that users can extend by adding new functions. Many such extensions of the language in the form of packages are easily downloadable from the Comp- hensive R Archive Network (CRAN).

A Student’s Guide to Bayesian Statistics


Author: Ben Lambert
Publisher: SAGE
ISBN: 1526418266
Category: Social Science
Page: 520
View: 8323
DOWNLOAD NOW »
Supported by a wealth of learning features, exercises, and visual elements as well as online video tutorials and interactive simulations, this book is the first student-focused introduction to Bayesian statistics. Without sacrificing technical integrity for the sake of simplicity, the author draws upon accessible, student-friendly language to provide approachable instruction perfectly aimed at statistics and Bayesian newcomers. Through a logical structure that introduces and builds upon key concepts in a gradual way and slowly acclimatizes students to using R and Stan software, the book covers: An introduction to probability and Bayesian inference Understanding Bayes' rule Nuts and bolts of Bayesian analytic methods Computational Bayes and real-world Bayesian analysis Regression analysis and hierarchical methods This unique guide will help students develop the statistical confidence and skills to put the Bayesian formula into practice, from the basic concepts of statistical inference to complex applications of analyses.

Learning Statistics with R


Author: Daniel Navarro
Publisher: Lulu.com
ISBN: 1326189727
Category:
Page: N.A
View: 6500
DOWNLOAD NOW »


Bayesian Statistics

An Introduction
Author: Peter M. Lee
Publisher: John Wiley & Sons
ISBN: 1118359771
Category: Mathematics
Page: 488
View: 5822
DOWNLOAD NOW »
Bayesian Statistics is the school of thought that combines priorbeliefs with the likelihood of a hypothesis to arrive at posteriorbeliefs. The first edition of Peter Lee’s book appeared in1989, but the subject has moved ever onwards, with increasingemphasis on Monte Carlo based techniques. This new fourth edition looks at recent techniques such asvariational methods, Bayesian importance sampling, approximateBayesian computation and Reversible Jump Markov Chain Monte Carlo(RJMCMC), providing a concise account of the way in which theBayesian approach to statistics develops as well as how itcontrasts with the conventional approach. The theory is built upstep by step, and important notions such as sufficiency are broughtout of a discussion of the salient features of specificexamples. This edition: Includes expanded coverage of Gibbs sampling, including morenumerical examples and treatments of OpenBUGS, R2WinBUGS andR2OpenBUGS. Presents significant new material on recent techniques such asBayesian importance sampling, variational Bayes, ApproximateBayesian Computation (ABC) and Reversible Jump Markov Chain MonteCarlo (RJMCMC). Provides extensive examples throughout the book to complementthe theory presented. Accompanied by a supporting website featuring new material andsolutions. More and more students are realizing that they need to learnBayesian statistics to meet their academic and professional goals.This book is best suited for use as a main text in courses onBayesian statistics for third and fourth year undergraduates andpostgraduate students.

Reasoning with Data

An Introduction to Traditional and Bayesian Statistics Using R
Author: Jeffrey M. Stanton
Publisher: Guilford Publications
ISBN: 1462530265
Category: Computers
Page: 325
View: 9104
DOWNLOAD NOW »
Engaging and accessible, this book teaches readers how to use inferential statistical thinking to check their assumptions, assess evidence about their beliefs, and avoid overinterpreting results that may look more promising than they really are. It provides step-by-step guidance for using both classical (frequentist) and Bayesian approaches to inference. Statistical techniques covered side by side from both frequentist and Bayesian approaches include hypothesis testing, replication, analysis of variance, calculation of effect sizes, regression, time series analysis, and more. Students also get a complete introduction to the open-source R programming language and its key packages. Throughout the text, simple commands in R demonstrate essential data analysis skills using real-data examples. The companion website (www.guilford.com/stanton2-materials) provides annotated R code for the book's examples, in-class exercises, supplemental reading lists, and links to online videos, interactive materials, and other resources. Pedagogical Features: *Playful, conversational style and gradual approach; suitable for students without strong math backgrounds. *End-of-chapter exercises based on real data supplied in the free R package. *Technical explanation and equation/output boxes. *Appendices on how to install R and work with the sample datasets.

Introduction to Psychometric Theory


Author: Tenko Raykov,George A. Marcoulides
Publisher: Routledge
ISBN: 1136900020
Category: Psychology
Page: 347
View: 5471
DOWNLOAD NOW »
This new text provides a state-of the-art introduction to educational and psychological testing and measurement theory that reflects many intellectual developments of the past two decades. The book introduces psychometric theory using a latent variable modeling (LVM) framework and emphasizes interval estimation throughout, so as to better prepare readers for studying more advanced topics later in their careers. Featuring numerous examples, it presents an applied approach to conducting testing and measurement in the behavioral, social, and educational sciences. Readers will find numerous tips on how to use test theory in today’s actual testing situations. To reflect the growing use of statistical software in psychometrics, the authors introduce the use of Mplus after the first few chapters. IBM SPSS, SAS, and R are also featured in several chapters. Software codes and associated outputs are reviewed throughout to enhance comprehension. Essentially all of the data used in the book are available on the website. In addition instructors will find helpful PowerPoint lecture slides and questions and problems for each chapter. The authors rely on LVM when discussing fundamental concepts such as exploratory and confirmatory factor analysis, test theory, generalizability theory, reliability and validity, interval estimation, nonlinear factor analysis, generalized linear modeling, and item response theory. The varied applications make this book a valuable tool for those in the behavioral, social, educational, and biomedical disciplines, as well as in business, economics, and marketing. A brief introduction to R is also provided. Intended as a text for advanced undergraduate and/or graduate courses in psychometrics, testing and measurement, measurement theory, psychological testing, and/or educational and/or psychological measurement taught in departments of psychology, education, human development, epidemiology, business, and marketing, it will also appeal to researchers in these disciplines. Prerequisites include an introduction to statistics with exposure to regression analysis and ANOVA. Familiarity with SPSS, SAS, STATA, or R is also beneficial. As a whole, the book provides an invaluable introduction to measurement and test theory to those with limited or no familiarity with the mathematical and statistical procedures involved in measurement and testing.

Data Analysis

A Bayesian Tutorial
Author: Devinderjit Sivia,John Skilling
Publisher: OUP Oxford
ISBN: 0191546704
Category: Mathematics
Page: 264
View: 9045
DOWNLOAD NOW »


The BUGS Book

A Practical Introduction to Bayesian Analysis
Author: David Lunn,Chris Jackson,Nicky Best,Andrew Thomas,David Spiegelhalter
Publisher: CRC Press
ISBN: 1466586664
Category: Mathematics
Page: 399
View: 7925
DOWNLOAD NOW »
Bayesian statistical methods have become widely used for data analysis and modelling in recent years, and the BUGS software has become the most popular software for Bayesian analysis worldwide. Authored by the team that originally developed this software, The BUGS Book provides a practical introduction to this program and its use. The text presents complete coverage of all the functionalities of BUGS, including prediction, missing data, model criticism, and prior sensitivity. It also features a large number of worked examples and a wide range of applications from various disciplines. The book introduces regression models, techniques for criticism and comparison, and a wide range of modelling issues before going into the vital area of hierarchical models, one of the most common applications of Bayesian methods. It deals with essentials of modelling without getting bogged down in complexity. The book emphasises model criticism, model comparison, sensitivity analysis to alternative priors, and thoughtful choice of prior distributions—all those aspects of the "art" of modelling that are easily overlooked in more theoretical expositions. More pragmatic than ideological, the authors systematically work through the large range of "tricks" that reveal the real power of the BUGS software, for example, dealing with missing data, censoring, grouped data, prediction, ranking, parameter constraints, and so on. Many of the examples are biostatistical, but they do not require domain knowledge and are generalisable to a wide range of other application areas. Full code and data for examples, exercises, and some solutions can be found on the book’s website.

Introduction to Bayesian Statistics


Author: William M. Bolstad,James M. Curran
Publisher: John Wiley & Sons
ISBN: 1118593227
Category: Mathematics
Page: 624
View: 8188
DOWNLOAD NOW »
"...this edition is useful and effective in teaching Bayesian inference at both elementary and intermediate levels. It is a well-written book on elementary Bayesian inference, and the material is easily accessible. It is both concise and timely, and provides a good collection of overviews and reviews of important tools used in Bayesian statistical methods." There is a strong upsurge in the use of Bayesian methods in applied statistical analysis, yet most introductory statistics texts only present frequentist methods. Bayesian statistics has many important advantages that students should learn about if they are going into fields where statistics will be used. In this third Edition, four newly-added chapters address topics that reflect the rapid advances in the field of Bayesian statistics. The authors continue to provide a Bayesian treatment of introductory statistical topics, such as scientific data gathering, discrete random variables, robust Bayesian methods, and Bayesian approaches to inference for discrete random variables, binomial proportions, Poisson, and normal means, and simple linear regression. In addition, more advanced topics in the field are presented in four new chapters: Bayesian inference for a normal with unknown mean and variance; Bayesian inference for a Multivariate Normal mean vector; Bayesian inference for the Multiple Linear Regression Model; and Computational Bayesian Statistics including Markov Chain Monte Carlo. The inclusion of these topics will facilitate readers' ability to advance from a minimal understanding of Statistics to the ability to tackle topics in more applied, advanced level books. Minitab macros and R functions are available on the book's related website to assist with chapter exercises. Introduction to Bayesian Statistics, Third Edition also features: Topics including the Joint Likelihood function and inference using independent Jeffreys priors and join conjugate prior The cutting-edge topic of computational Bayesian Statistics in a new chapter, with a unique focus on Markov Chain Monte Carlo methods Exercises throughout the book that have been updated to reflect new applications and the latest software applications Detailed appendices that guide readers through the use of R and Minitab software for Bayesian analysis and Monte Carlo simulations, with all related macros available on the book's website Introduction to Bayesian Statistics, Third Edition is a textbook for upper-undergraduate or first-year graduate level courses on introductory statistics course with a Bayesian emphasis. It can also be used as a reference work for statisticians who require a working knowledge of Bayesian statistics.